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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
229
ChIP-seq
89
total RNA-seq
9
WGBS
6
RRBS
5
ATAC-seq
4
DNase-seq
1
FAIRE-seq
Assay category
229
DNA binding
89
Transcription
15
DNA methylation
10
DNA accessibility
Target of assay
162
histone modification
161
histone
89
broad histone mark
72
narrow histone mark
42
control
25
transcription factor
4
RNA binding protein
1
chromatin remodeller
Date released
636
February, 2021
406
November, 2017
343
August, 2017
296
May, 2020
276
October, 2019
168
July, 2018
147
August, 2021
137
June, 2019
115
May, 2019
114
May, 2021
97
July, 2019
90
February, 2023
88
November, 2018
76
October, 2018
73
September, 2018
66
May, 2022
57
April, 2019
56
November, 2019
51
December, 2017
49
April, 2018
47
March, 2020
40
May, 2024
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
16
November, 2020
11
September, 2017
5
December, 2019
5
March, 2019
4
January, 2018
3
August, 2018
3
June, 2018
August, 2022
1
May, 2023
1
October, 2022
Available data
233
fastq
228
bam
224
bigWig
99
bed narrowPeak
89
tsv
71
tagAlign
41
bigBed narrowPeak
40
bed broadPeak
26
bed bed3+
14
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
336
Homo sapiens
Biosample type
284
tissue
in vitro differentiated cells
59
primary cell
Organ
188
pancreas
57
adipose tissue
57
connective tissue
54
liver
29
epithelium
26
musculature of body
Project
343
AMP
Genome assembly (visualization)
227
hg19
200
GRCh38
Lab
343
AMP-T2D consortium
Audit category:
34
missing controlled_by
Audit category:
10
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
biosample_type!
in vitro differentiated cells
month_released!
August, 2022
organ_slims!
kidney
BIOSAMPLE
ASSAY
343 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
ATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
42
89
1
1
liver
48
3
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
pancreas
14
+ See 4 more…
primary cell
skeletal muscle myoblast
15
1
2
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic endocrine cell
12
pancreatic acinar cell
1
See all biosamples
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