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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
178
DNase-seq
93
ChIP-seq
17
Hi-C
2
ATAC-seq
Assay category
180
DNA accessibility
93
DNA binding
17
3D chromatin structure
Target of assay
49
histone
49
histone modification
44
transcription factor
28
broad histone mark
21
narrow histone mark
4
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
163
June, 2019
64
November, 2017
27
August, 2017
9
March, 2020
9
November, 2018
8
October, 2019
4
October, 2017
2
August, 2021
2
March, 2019
2
November, 2019
Available data
2777
bam
2550
bigWig
1518
bed narrowPeak
1328
tsv
949
fastq
933
bigBed narrowPeak
298
tagAlign
273
bed broadPeak
236
bed bed3+
236
bigBed broadPeak
161
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
19
bedpe bed3+
17
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
284
Homo sapiens
Biosample type
224
tissue
61
cell line
primary cell
5
in vitro differentiated cells
Organ
69
kidney
63
liver
47
musculature of body
36
brain
36
limb
30
heart
25
pancreas
18
ureter
6
blood vessel
6
vasculature
4
artery
4
connective tissue
3
adipose tissue
3
eye
2
nerve
1
epithelium
1
spleen
Project
290
AMP
Genome assembly (visualization)
273
hg19
237
GRCh38
Lab
285
AMP-T2D consortium
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
6
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
1
inconsistent assembly
biosample_type!
primary cell
BIOSAMPLE
ASSAY
290 results
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DNase-seq
ChIP-seq
Hi-C
ATAC-seq
tissue
heart
18
1
brain
14
3
muscle of arm
17
kidney
13
1
muscle of leg
13
+ See 47 more…
cell line
HepG2
58
1
EndoC_BH1
1
Panc1
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
adipocyte
1
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
See all biosamples
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