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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
172
ChIP-seq
Assay category
172
DNA binding
Target of assay
163
histone
163
histone modification
105
narrow histone mark
58
broad histone mark
control
9
transcription factor
Date released
August, 2017
67
November, 2017
40
October, 2019
27
May, 2020
16
August, 2021
12
October, 2017
5
February, 2021
5
May, 2021
Available data
2676
bigWig
2647
bam
1585
bed narrowPeak
1400
tsv
1000
bigBed narrowPeak
762
fastq
281
bed broadPeak
270
bigBed broadPeak
231
bed bed3+
172
tagAlign
161
txt
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
20
bedpe bed3+
19
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
172
Homo sapiens
Biosample type
135
tissue
18
in vitro differentiated cells
16
cell line
3
primary cell
Organ
99
brain
41
liver
5
epithelium
4
artery
4
blood vessel
4
heart
4
vasculature
2
pancreas
1
pituitary gland
Project
172
AMP
84
T1D
Genome assembly (visualization)
145
GRCh38
115
hg19
Lab
172
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
11
inconsistent control read length
biosample_type!
stem cell
month_released!
August, 2017
target.investigated_as!
control
BIOSAMPLE
ASSAY
172 results
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ChIP-seq
tissue
liver
27
substantia nigra
14
caudate nucleus
13
layer of hippocampus
13
brain
12
+ See 39 more…
in vitro differentiated cells
neural progenitor cell
13
cardiomyocytes
3
pancreatic PP cell
2
cell line
HepG2
11
smooth muscle cell of the coronary artery
4
iPSC derived cell line
1
primary cell
hepatocyte
3
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