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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
394
ChIP-seq
19
total RNA-seq
2
ATAC-seq
2
Hi-C
2
STARR-seq
1
RRBS
1
WGBS
1
pCHi-C
1
whole genome sequencing assay
Assay category
394
DNA binding
19
Transcription
2
3D chromatin structure
2
DNA accessibility
2
DNA methylation
1
DNA sequencing
Target of assay
299
transcription factor
82
recombinant protein
62
control
56
RNA binding protein
30
histone
30
histone modification
21
chromatin remodeller
16
broad histone mark
14
narrow histone mark
2
other context
2
other post-translational modification
Date released
315
November, 2017
46
November, 2018
32
August, 2021
15
December, 2017
5
December, 2019
5
January, 2019
1
December, 2018
1
February, 2021
1
July, 2019
1
May, 2020
1
October, 2019
Available data
393
bam
382
fastq
357
bigWig
328
bed narrowPeak
309
bigBed narrowPeak
60
bed broadPeak
60
bigBed broadPeak
20
tsv
16
tagAlign
bed bed3+
3
tar
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
bedpe bed3+
1
hdf5
1
hic
1
vcf
Organism
423
Homo sapiens
Biosample type
400
cell line
tissue
15
in vitro differentiated cells
8
primary cell
Organ
423
liver
332
epithelium
283
pancreas
115
connective tissue
95
vasculature
91
blood vessel
77
heart
68
artery
61
blood
61
bodily fluid
45
kidney
34
embryo
20
vein
13
brain
13
musculature of body
4
eye
3
adipose tissue
1
mammary gland
1
pericardium
0
stomach
Project
423
AMP
Genome assembly (visualization)
350
hg19
288
GRCh38
Lab
392
AMP-T2D consortium
31
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
biosample_type!
tissue
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
423 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
STARR-seq
RRBS
WGBS
pCHi-C
whole genome sequencing assay
cell line
HepG2
378
14
1
2
2
1
1
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
1
5
1
Liver fetal (hepatocyte)
1
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