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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 878ChIP-seq
  • 306total RNA-seq
  • 222ATAC-seq
  • 104single cell RNA-seq
  • 34DNase-seq
  • 16pCHi-C
  • 14Hi-C
  • 10RRBS
  • 6MeRIP-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 2small RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1DNAme array
  • 1FAIRE-seq
  • 1MPRA
  • 1WGBS
  • 1whole genome sequencing assay
Assay category
  • 878DNA binding
  • 412Transcription
  • 257DNA accessibility
  • 143D chromatin structure
  • 12DNA methylation
  • 1DNA sequencing
Target of assay
  • 420transcription factor
  • 303histone
  • 303histone modification
  • 156control
  • 154broad histone mark
  • 148narrow histone mark
  • 89recombinant protein
  • 86RNA binding protein
  • 34chromatin remodeller
  • 3nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 324November, 2017
  • 207May, 2021
  • 127August, 2017
  • 125February, 2021
  • 103May, 2020
  • 90August, 2021
  • 73September, 2018
  • 72October, 2019
  • 62November, 2018
  • 55June, 2019
  • 48July, 2018
  • 46December, 2017
  • 43April, 2018
  • 39February, 2018
  • 31July, 2019
  • 29February, 2023
  • 28December, 2018
  • 23January, 2019
  • 21March, 2020
  • 21November, 2019
  • 12November, 2020
  • 7December, 2019
  • 6January, 2018
  • 5May, 2019
  • 5September, 2017
  • 4August, 2018
  • 3June, 2018
  • 2October, 2018
  • 1October, 2022
Available data
  • 1301bam
  • 1203bigWig
  • 812fastq
  • 747bed narrowPeak
  • 481bigBed narrowPeak
  • 420tsv
  • 109bed broadPeak
  • 109bigBed broadPeak
  • 76tagAlign
  • 68bed bed3+
  • 11bed bedMethyl
  • 11bigBed bedMethyl
  • 10bedpe bed3+
  • 8hic
  • 7bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 4txt
  • 2csv
  • 2ibed
  • 1vcf
Organism
  • 1610Homo sapiens
Biosample type
  • tissue
  • 651cell line
  • 559primary cell
  • 394in vitro differentiated cells
  • 8stem cell
Organ
  • 430liver
  • 353epithelium
  • 285pancreas
  • 136connective tissue
  • 103vasculature
  • 97blood vessel
  • 80heart
  • 68artery
  • 61blood
  • 61bodily fluid
  • 55kidney
  • 37embryo
  • 22vein
  • 21brain
  • 14musculature of body
  • 5eye
  • 3adipose tissue
  • 1mammary gland
  • 1pericardium
Project
  • 1612AMP
  • 324HPAP
  • 213T1D
  • 4community
  • 1ITG
Genome assembly (visualization)
  • 1271hg19
  • 1073GRCh38
  • 5hg18
Lab
  • 1483AMP-T2D consortium
  • 82Kyle Gaulton, UCSD
  • 34Bing Ren, UCSD
  • 7Struan F.A. Grant, CHOP
  • 6Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
  • 253inconsistent ontology term
  • 3audit script error
  • 1inconsistent control
  • 1inconsistent replicate
Audit category:
  • 63missing controlled_by
Audit category:
  • 50inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
biosample_type!
  • tissue
BIOSAMPLE
ASSAY

1612 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
pCHi-C
Hi-C
RRBS
MeRIP-seq
GRO-seq
STARR-seq
Capture-C
small RNA-seq
CRISPR genome editing followed by sgRNA sequencing
DNAme array
FAIRE-seq
MPRA
WGBS
whole genome sequencing assay
cell line
HepG237814122211
EndoC_BH11331191621
smooth muscle cell of the coronary artery6528
GM12878601
Panc11311
primary cell
pancreatic beta cell1310712
pancreatic alpha cell1310612
CD8-positive, alpha-beta T cell3322
pancreatic ductal cell134410
pancreatic acinar cell84512
in vitro differentiated cells
adipocyte675811
cardiomyocytes359
embryonic stem cell40761
neural progenitor cell21710
pancreatic endoderm1841
stem cell
hESC31
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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