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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1325
ChIP-seq
1135
total RNA-seq
278
ATAC-seq
124
single cell RNA-seq
87
RNA microarray
29
pCHi-C
28
WGBS
18
Hi-C
16
small RNA-seq
11
RRBS
10
MeRIP-seq
7
snATAC-seq
5
STARR-seq
4
FAIRE-seq
3
DNase-seq
3
snDrop-seq
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
whole genome sequencing assay
Assay category
1325
DNA binding
1275
Transcription
292
DNA accessibility
39
DNA methylation
18
3D chromatin structure
1
DNA sequencing
Target of assay
650
histone modification
649
histone
414
transcription factor
333
narrow histone mark
316
broad histone mark
263
control
89
RNA binding protein
89
recombinant protein
30
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
640
February, 2021
397
November, 2017
273
August, 2021
266
October, 2019
258
August, 2017
194
May, 2020
120
July, 2018
115
May, 2019
80
April, 2019
78
February, 2023
78
November, 2018
77
July, 2019
74
October, 2018
65
May, 2022
59
May, 2021
56
November, 2019
48
December, 2017
44
March, 2020
40
May, 2024
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
15
May, 2023
10
November, 2020
6
April, 2018
5
March, 2019
4
September, 2017
3
December, 2019
3
January, 2018
1
August, 2022
1
October, 2022
Available data
2449
bam
2258
bigWig
1354
bed narrowPeak
1193
tsv
886
bigBed narrowPeak
769
fastq
272
bed broadPeak
258
tagAlign
235
bigBed broadPeak
bed bed3+
158
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
13
hic
12
bedpe bed3+
6
bed bed3
6
csv
3
tar
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
3078
Homo sapiens
Biosample type
2468
tissue
620
cell line
522
primary cell
369
in vitro differentiated cells
5
stem cell
Organ
754
liver
541
connective tissue
534
pancreas
482
adipose tissue
352
heart
238
brain
203
kidney
194
blood vessel
194
vasculature
158
bone element
135
artery
90
epithelium
86
limb
53
eye
49
musculature of body
41
nerve
34
blood
34
bodily fluid
17
spleen
16
skeleton
8
embryo
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
3088
AMP
47
KPMP
40
T1D
19
LungMap
2
community
Genome assembly (visualization)
2081
GRCh38
2057
hg19
Lab
2789
AMP-T2D consortium
142
Katalin Susztak, Upenn
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
25
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
178
inconsistent ontology term
27
inconsistent control
8
audit script error
1
inconsistent replicate
Audit category:
25
missing controlled_by
Audit category:
32
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
files.file_type!
bed bed3+
month_released!
December, 2018
BIOSAMPLE
ASSAY
3088 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
RNA microarray
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
MeRIP-seq
snATAC-seq
STARR-seq
FAIRE-seq
DNase-seq
snDrop-seq
Capture-C
CRISPR genome editing followed by sgRNA sequencing
MPRA
whole genome sequencing assay
tissue
islet of Langerhans
48
285
57
6
4
3
1
4
1
1
1
adipose tissue
2
382
3
1
3
liver
142
167
20
1
1
3
1
1
1
kidney
27
49
75
17
1
1
6
1
bone element
84
+ See 159 more…
cell line
HepG2
378
14
1
1
1
1
2
1
EndoC_BH1
13
31
19
1
6
2
1
smooth muscle cell of the coronary artery
6
52
8
GM12878
33
1
Panc1
13
+ See 13 more…
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