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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
357
ChIP-seq
10
ATAC-seq
2
DNase-seq
Assay category
357
DNA binding
12
DNA accessibility
Target of assay
352
transcription factor
88
recombinant protein
63
RNA binding protein
histone
33
histone modification
30
chromatin remodeller
17
broad histone mark
16
narrow histone mark
2
other context
2
other post-translational modification
Date released
236
November, 2017
56
November, 2018
27
December, 2018
14
February, 2021
14
January, 2019
11
August, 2021
9
October, 2019
2
November, 2019
Available data
545
bam
483
bigWig
411
fastq
369
bed narrowPeak
335
bigBed narrowPeak
117
tsv
45
bed broadPeak
45
bigBed broadPeak
9
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
txt
1
vcf
Organism
369
Homo sapiens
Biosample type
465
tissue
369
cell line
79
primary cell
52
in vitro differentiated cells
Organ
292
liver
53
blood
53
bodily fluid
12
artery
12
blood vessel
12
heart
12
vasculature
8
kidney
3
epithelium
3
pancreas
Project
369
AMP
Genome assembly (visualization)
365
hg19
326
GRCh38
Lab
358
AMP-T2D consortium
11
Bing Ren, UCSD
Audit category:
9
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
11
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
files.file_type!
txt
target.investigated_as!
histone
BIOSAMPLE
ASSAY
369 results
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ChIP-seq
ATAC-seq
DNase-seq
cell line
HepG2
291
1
GM12878
53
smooth muscle cell of the coronary artery
4
8
RCC 7860 HIF1a re-expression
3
EndoC_BH1
1
1
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