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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
333
ChIP-seq
2
DNase-seq
Assay category
333
DNA binding
2
DNA accessibility
Target of assay
328
transcription factor
81
recombinant protein
61
RNA binding protein
30
chromatin remodeller
20
histone
histone modification
10
broad histone mark
10
narrow histone mark
2
other context
2
other post-translational modification
Date released
236
November, 2017
56
November, 2018
27
December, 2018
14
January, 2019
2
October, 2019
Available data
479
bam
427
bigWig
411
fastq
357
bed narrowPeak
335
bigBed narrowPeak
65
tsv
45
bed broadPeak
45
bigBed broadPeak
3
bed bed3+
3
tagAlign
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
335
Homo sapiens
Biosample type
335
cell line
241
tissue
56
primary cell
5
in vitro differentiated cells
Organ
280
liver
53
blood
53
bodily fluid
1
epithelium
1
kidney
1
pancreas
Project
335
AMP
Genome assembly (visualization)
331
hg19
303
GRCh38
Lab
335
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
11
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
organ_slims!
blood vessel
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
335 results
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ChIP-seq
DNase-seq
cell line
HepG2
280
GM12878
53
Panc1
1
glomerular visceral epithelial cell
1
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