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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ChIP-seq
Assay category
29
DNA binding
Target of assay
354
transcription factor
82
recombinant protein
74
control
65
RNA binding protein
30
chromatin remodeller
29
histone
29
histone modification
15
broad histone mark
14
narrow histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
15
November, 2017
10
November, 2019
October, 2019
3
August, 2021
1
January, 2019
Available data
29
bigWig
27
bed narrowPeak
26
bam
16
fastq
14
bed broadPeak
14
bigBed broadPeak
14
bigBed narrowPeak
11
tagAlign
Organism
29
Homo sapiens
Biosample type
457
tissue
132
primary cell
112
in vitro differentiated cells
29
cell line
2
stem cell
Organ
18
liver
10
epithelium
10
pancreas
1
blood
1
bodily fluid
Project
29
AMP
2
T1D
Genome assembly (visualization)
29
hg19
24
GRCh38
Lab
26
AMP-T2D consortium
3
Bing Ren, UCSD
Audit category:
10
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
month_released!
October, 2019
BIOSAMPLE
ASSAY
29 results
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ChIP-seq
cell line
HepG2
18
EndoC_BH1
10
GM12878
1
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