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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
201
ChIP-seq
136
total RNA-seq
35
ATAC-seq
9
pCHi-C
5
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
201
DNA binding
138
Transcription
36
DNA accessibility
4
3D chromatin structure
Target of assay
114
histone
114
histone modification
57
broad histone mark
56
narrow histone mark
49
transcription factor
38
control
11
RNA binding protein
3
chromatin remodeller
Date released
132
May, 2021
68
August, 2017
46
December, 2017
42
August, 2021
39
February, 2018
22
February, 2021
13
February, 2023
12
March, 2020
8
October, 2019
5
January, 2018
5
November, 2019
2
December, 2019
1
August, 2018
Available data
294
bam
262
bigWig
145
fastq
135
tsv
134
bed narrowPeak
40
tagAlign
28
bed bed3+
17
bigBed narrowPeak
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
395
Homo sapiens
Biosample type
2680
tissue
651
cell line
559
primary cell
387
in vitro differentiated cells
8
stem cell
Organ
94
connective tissue
29
embryo
24
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
395
AMP
2
community
Genome assembly (visualization)
293
hg19
268
GRCh38
5
hg18
Lab
344
AMP-T2D consortium
47
Kyle Gaulton, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
115
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
19
inconsistent control read length
files.file_type!
bed bedgraph
BIOSAMPLE
ASSAY
395 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
67
5
4
1
1
cardiomyocytes
3
59
embryonic stem cell
40
7
5
1
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
+ See 29 more…
stem cell
hESC
3
1
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
See all biosamples
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