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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
132
ChIP-seq
17
ATAC-seq
Assay category
132
DNA binding
17
DNA accessibility
Target of assay
67
histone
67
histone modification
36
narrow histone mark
35
transcription factor
30
broad histone mark
30
control
4
RNA binding protein
2
chromatin remodeller
Date released
53
August, 2017
30
August, 2021
29
December, 2017
24
February, 2018
6
May, 2021
5
November, 2019
2
October, 2019
Available data
291
bam
259
bigWig
141
fastq
132
bed narrowPeak
tsv
40
tagAlign
25
bed bed3+
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
149
Homo sapiens
Biosample type
428
tissue
164
primary cell
149
in vitro differentiated cells
121
cell line
3
stem cell
Organ
53
connective tissue
22
embryo
8
epithelium
3
pancreas
1
liver
Project
149
AMP
Genome assembly (visualization)
123
GRCh38
122
hg19
Lab
149
AMP-T2D consortium
Audit category:
14
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
files.file_type!
bigBed narrowPeak
tsv
BIOSAMPLE
ASSAY
149 results
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ChIP-seq
ATAC-seq
in vitro differentiated cells
adipocyte
53
neural progenitor cell
20
10
pancreatic endoderm
18
definitive endodermal cell
8
primitive gut cell
8
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