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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
128
ATAC-seq
70
ChIP-seq
30
single cell RNA-seq
17
total RNA-seq
13
DNase-seq
4
RRBS
2
Hi-C
2
small RNA-seq
1
DNAme array
1
pCHi-C
Assay category
141
DNA accessibility
70
DNA binding
49
Transcription
5
DNA methylation
2
3D chromatin structure
Target of assay
57
histone
57
histone modification
30
narrow histone mark
27
broad histone mark
11
control
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
102
May, 2020
35
June, 2019
30
August, 2017
20
May, 2021
18
July, 2019
15
July, 2018
12
February, 2023
11
September, 2018
10
April, 2018
6
November, 2020
3
February, 2021
3
November, 2017
2
June, 2018
1
October, 2019
Available data
187
bam
167
bigWig
75
bed narrowPeak
71
fastq
58
tsv
48
bigBed narrowPeak
27
bed broadPeak
27
bigBed broadPeak
14
bed bed3+
12
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
csv
2
hdf5
1
bed bed3
Organism
268
Homo sapiens
Biosample type
2634
tissue
576
cell line
323
in vitro differentiated cells
268
primary cell
8
stem cell
Organ
epithelium
194
pancreas
38
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
5
eye
2
adipose tissue
2
artery
1
pericardium
Project
268
AMP
172
HPAP
1
ITG
Genome assembly (visualization)
186
hg19
130
GRCh38
Lab
268
AMP-T2D consortium
Kyle Gaulton, UCSD
Audit category:
39
inconsistent ontology term
Audit category:
23
missing controlled_by
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
files.file_type!
csv
lab.title!
Kyle Gaulton, UCSD
organ_slims!
epithelium
BIOSAMPLE
ASSAY
268 results
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ATAC-seq
ChIP-seq
single cell RNA-seq
total RNA-seq
DNase-seq
RRBS
Hi-C
small RNA-seq
DNAme array
pCHi-C
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
22
2
1
pancreatic endocrine cell
23
CD4-positive, alpha-beta memory T cell
22
skeletal muscle myoblast
15
1
2
1
monocyte
15
1
1
1
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