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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
ChIP-seq
5
total RNA-seq
4
DNase-seq
3
Hi-C
1
ATAC-seq
1
FAIRE-seq
1
RRBS
Assay category
21
DNA binding
6
DNA accessibility
5
Transcription
3
3D chromatin structure
1
DNA methylation
Target of assay
18
histone
18
histone modification
10
broad histone mark
8
narrow histone mark
3
control
Date released
22
October, 2019
5
December, 2019
4
August, 2021
2
July, 2019
2
June, 2019
1
March, 2020
Available data
32
bam
26
bigWig
19
bed narrowPeak
15
bigBed narrowPeak
8
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
5
tsv
4
tagAlign
2
hic
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hdf5
1
tar
Organism
36
Homo sapiens
Biosample type
401
cell line
361
tissue
36
primary cell
15
in vitro differentiated cells
Organ
254
epithelium
194
pancreas
38
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
5
eye
2
adipose tissue
2
artery
1
pericardium
Project
36
AMP
Genome assembly (visualization)
30
hg19
23
GRCh38
Lab
36
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
organ_slims!
intestine
BIOSAMPLE
ASSAY
36 results
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ChIP-seq
total RNA-seq
DNase-seq
Hi-C
ATAC-seq
FAIRE-seq
RRBS
primary cell
endothelial cell of umbilical vein
17
2
2
1
hepatocyte
4
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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