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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 195ChIP-seq
  • 151ATAC-seq
  • 102single cell RNA-seq
  • 59total RNA-seq
  • 31DNase-seq
  • 10RRBS
  • 6Hi-C
  • 2small RNA-seq
  • 1DNAme array
  • 1FAIRE-seq
  • 1pCHi-C
Assay category
  • 195DNA binding
  • 183DNA accessibility
  • 163Transcription
  • 11DNA methylation
  • 63D chromatin structure
Target of assay
  • 153histone
  • 153histone modification
  • 78broad histone mark
  • 75narrow histone mark
  • 35control
  • 10RNA binding protein
  • 10transcription factor
  • 1chromatin remodeller
Date released
  • 102May, 2020
  • 73September, 2018
  • 59August, 2017
  • 55June, 2019
  • 55May, 2021
  • 48July, 2018
  • 43April, 2018
  • 34October, 2019
  • 31July, 2019
  • 12February, 2023
  • 9November, 2017
  • 6November, 2020
  • 5December, 2019
  • 5May, 2019
  • 5September, 2017
  • 4August, 2021
  • 3August, 2018
  • 3February, 2021
  • 3June, 2018
  • 2October, 2018
  • 1March, 2020
  • 1November, 2018
Available data
  • 429bam
  • 423bigWig
  • 240fastq
  • 211bed narrowPeak
  • 168tsv
  • 109bigBed narrowPeak
  • 49bed broadPeak
  • 49bigBed broadPeak
  • 37bed bed3+
  • 16tagAlign
  • 10bed bedMethyl
  • 10bigBed bedMethyl
  • 4hdf5
  • 2csv
  • 2hic
  • 1bed bed3
  • 1bedpe bed3+
  • 1tar
Organism
  • 559Homo sapiens
Biosample type
  • 2680tissue
  • 651cell line
  • 559primary cell
  • 394in vitro differentiated cells
  • 8stem cell
Organ
  • 254epithelium
  • 194pancreas
  • 38connective tissue
  • 37vasculature
  • 36kidney
  • 31blood vessel
  • 22vein
  • 21brain
  • 14liver
  • 14musculature of body
  • 13heart
  • 5eye
  • 2adipose tissue
  • 2artery
  • 1pericardium
Project
  • 559AMP
  • 324HPAP
  • 204T1D
  • 1ITG
Genome assembly (visualization)
  • 445hg19
  • 345GRCh38
Lab
  • 524AMP-T2D consortium
  • 35Kyle Gaulton, UCSD
Audit category:
  • 49inconsistent ontology term
  • 1audit script error
Audit category:
  • 44missing controlled_by
Audit category:
  • 5inconsistent control read length
  • 2inconsistent assembly
  • 1inconsistent control run_type
BIOSAMPLE
ASSAY

559 results

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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
DNase-seq
RRBS
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
pancreatic beta cell1371210
pancreatic alpha cell1361210
CD8-positive, alpha-beta T cell3322
pancreatic ductal cell134104
pancreatic acinar cell85124
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