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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
905
ChIP-seq
580
total RNA-seq
241
ATAC-seq
118
single cell RNA-seq
27
WGBS
24
pCHi-C
16
Hi-C
16
small RNA-seq
15
DNase-seq
11
RRBS
8
snATAC-seq
4
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
Assay category
905
DNA binding
714
Transcription
268
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
626
histone modification
625
histone
322
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
February, 2021
284
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
June, 2019
120
July, 2018
115
May, 2019
82
November, 2017
80
April, 2019
77
February, 2023
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
40
May, 2024
40
November, 2019
39
May, 2021
36
March, 2020
26
November, 2018
25
February, 2020
23
October, 2017
15
May, 2023
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1290
bam
1163
bigWig
811
bed narrowPeak
624
tsv
398
bigBed narrowPeak
377
fastq
238
tagAlign
68
txt
64
xls
50
bed broadPeak
42
bed bed3+
25
bed bedMethyl
25
bigBed bedMethyl
13
bigBed broadPeak
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1964
Homo sapiens
Biosample type
1972
tissue
555
cell line
501
primary cell
368
in vitro differentiated cells
stem cell
Organ
471
pancreas
360
liver
286
heart
240
brain
176
kidney
130
blood vessel
130
vasculature
102
connective tissue
101
adipose tissue
84
limb
71
artery
53
eye
50
musculature of body
43
nerve
25
spleen
15
epithelium
8
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
1972
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1242
GRCh38
1154
hg19
Lab
1713
AMP-T2D consortium
142
Katalin Susztak, Upenn
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
25
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
6
inconsistent ontology term
4
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
biosample_type!
stem cell
month_released!
February, 2021
June, 2019
BIOSAMPLE
ASSAY
1972 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
DNase-seq
RRBS
snATAC-seq
FAIRE-seq
MeRIP-seq
RNA microarray
tissue
islet of Langerhans
69
285
57
6
4
3
1
1
1
1
4
liver
145
167
20
3
1
1
1
2
1
kidney
27
49
75
12
1
1
6
1
heart left ventricle
35
3
2
18
4
1
1
1
left cardiac atrium
40
18
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