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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
185
ChIP-seq
184
ATAC-seq
123
total RNA-seq
118
single cell RNA-seq
87
RNA microarray
23
pCHi-C
16
Hi-C
11
RRBS
10
WGBS
8
snATAC-seq
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
241
Transcription
193
DNA accessibility
185
DNA binding
21
DNA methylation
16
3D chromatin structure
Target of assay
162
histone
162
histone modification
81
broad histone mark
81
narrow histone mark
20
control
5
RNA binding protein
5
transcription factor
2
nucleotide modification
Date released
229
August, 2021
114
August, 2017
93
February, 2021
77
February, 2023
55
October, 2019
42
May, 2022
40
May, 2024
28
March, 2020
25
February, 2020
15
May, 2023
13
July, 2019
13
November, 2017
8
October, 2017
4
July, 2018
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
April, 2019
1
August, 2022
1
May, 2021
1
November, 2019
Available data
bam
1770
bigWig
1075
tsv
982
bed narrowPeak
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
772
Homo sapiens
Biosample type
773
tissue
130
primary cell
101
in vitro differentiated cells
73
cell line
5
stem cell
Organ
181
heart
154
kidney
92
bone element
73
liver
53
eye
48
connective tissue
48
pancreas
47
adipose tissue
46
blood vessel
46
vasculature
39
artery
39
brain
38
musculature of body
15
epithelium
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
1
adrenal gland
esophagus
1
large intestine
1
lung
1
lymph node
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
773
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
156
GRCh38
106
hg19
Lab
539
AMP-T2D consortium
142
Katalin Susztak, Upenn
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Kyle Gaulton, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
87
inconsistent ontology term
9
audit script error
Audit category:
1
missing controlled_by
files.file_type!
bam
bigBed narrowPeak
organ_slims!
esophagus
BIOSAMPLE
ASSAY
773 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
RNA microarray
pCHi-C
Hi-C
RRBS
WGBS
snATAC-seq
MeRIP-seq
snDrop-seq
DNase-seq
tissue
kidney
75
49
17
1
1
6
islet of Langerhans
41
19
19
4
3
1
1
4
bone element
84
liver
23
20
20
1
1
1
1
3
left cardiac atrium
40
18
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