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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
185
ATAC-seq
185
ChIP-seq
118
single cell RNA-seq
98
total RNA-seq
87
RNA microarray
24
pCHi-C
16
Hi-C
11
RRBS
10
WGBS
8
snATAC-seq
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
216
Transcription
194
DNA accessibility
185
DNA binding
21
DNA methylation
16
3D chromatin structure
Target of assay
162
histone
162
histone modification
81
broad histone mark
81
narrow histone mark
20
control
5
RNA binding protein
5
transcription factor
2
nucleotide modification
Date released
229
August, 2021
114
August, 2017
93
February, 2021
77
February, 2023
56
October, 2019
42
May, 2022
40
May, 2024
29
March, 2020
February, 2020
15
May, 2023
13
July, 2019
13
November, 2017
8
October, 2017
4
July, 2018
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
April, 2019
1
August, 2022
1
May, 2021
1
November, 2019
Available data
bam
1770
bigWig
1051
tsv
982
bed narrowPeak
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
749
Homo sapiens
Biosample type
750
tissue
130
primary cell
103
in vitro differentiated cells
73
cell line
5
stem cell
Organ
178
heart
154
kidney
92
bone element
72
liver
52
eye
47
connective tissue
47
pancreas
46
adipose tissue
43
blood vessel
43
vasculature
37
artery
36
musculature of body
27
brain
15
epithelium
8
skeleton
5
gonad
5
limb
5
ovary
2
intestine
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
750
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
156
GRCh38
107
hg19
Lab
516
AMP-T2D consortium
142
Katalin Susztak, Upenn
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Kyle Gaulton, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
86
inconsistent ontology term
9
audit script error
Audit category:
1
missing controlled_by
files.file_type!
bam
month_released!
February, 2020
month_released!!
February, 2020
BIOSAMPLE
ASSAY
750 results
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Clear Filters
ATAC-seq
ChIP-seq
single cell RNA-seq
total RNA-seq
RNA microarray
pCHi-C
Hi-C
RRBS
WGBS
snATAC-seq
MeRIP-seq
snDrop-seq
DNase-seq
tissue
kidney
75
17
49
1
1
6
islet of Langerhans
19
41
19
4
3
1
1
4
bone element
84
liver
20
23
1
20
1
1
1
3
left cardiac atrium
40
18
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