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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
928
total RNA-seq
729
ChIP-seq
245
ATAC-seq
176
DNase-seq
123
single cell RNA-seq
85
RNA microarray
18
WGBS
16
small RNA-seq
9
Hi-C
8
snATAC-seq
6
RRBS
4
MeRIP-seq
4
pCHi-C
3
FAIRE-seq
3
snDrop-seq
Assay category
1067
Transcription
729
DNA binding
432
DNA accessibility
24
DNA methylation
9
3D chromatin structure
Target of assay
502
histone
502
histone modification
272
narrow histone mark
230
broad histone mark
158
control
71
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
82
November, 2017
80
April, 2019
77
February, 2023
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
40
May, 2024
40
November, 2019
39
May, 2021
March, 2020
26
November, 2018
25
February, 2020
23
October, 2017
15
May, 2023
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
December, 2019
2
January, 2018
1
August, 2022
Available data
1728
bam
1583
bigWig
957
tsv
916
bed narrowPeak
539
bigBed narrowPeak
202
fastq
187
bed broadPeak
179
bed bed3+
179
tagAlign
176
bigBed broadPeak
157
txt
64
xls
20
bed bedMethyl
20
bigBed bedMethyl
6
csv
5
bed bed3
4
hic
3
bedpe bed3+
1
bedpe
1
tagAlign bed3+
Organism
2356
Homo sapiens
Biosample type
2357
tissue
643
cell line
494
primary cell
316
in vitro differentiated cells
4
stem cell
Organ
489
connective tissue
430
adipose tissue
323
pancreas
306
heart
304
liver
263
brain
249
kidney
158
bone element
130
blood vessel
130
vasculature
122
limb
73
artery
56
eye
51
musculature of body
43
nerve
24
spleen
18
ureter
16
skeleton
14
epithelium
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
spinal cord
Project
2357
AMP
47
KPMP
27
T1D
19
LungMap
Genome assembly (visualization)
1692
GRCh38
1557
hg19
Lab
2098
AMP-T2D consortium
142
Katalin Susztak, Upenn
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
25
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
27
inconsistent control
7
audit script error
Audit category:
4
missing controlled_by
Audit category:
1
inconsistent control read length
month_released!
August, 2017
December, 2019
March, 2020
BIOSAMPLE
ASSAY
2357 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
WGBS
small RNA-seq
Hi-C
snATAC-seq
RRBS
MeRIP-seq
pCHi-C
FAIRE-seq
snDrop-seq
tissue
adipose tissue
382
3
islet of Langerhans
196
27
55
6
3
1
1
4
4
liver
166
97
20
2
1
1
kidney
49
27
75
13
16
1
6
1
1
bone element
84
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