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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
831
ChIP-seq
550
total RNA-seq
224
ATAC-seq
176
DNase-seq
124
single cell RNA-seq
86
RNA microarray
23
pCHi-C
21
WGBS
15
Hi-C
14
small RNA-seq
11
RRBS
8
snATAC-seq
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
831
DNA binding
688
Transcription
412
DNA accessibility
32
DNA methylation
15
3D chromatin structure
Target of assay
593
histone modification
592
histone
309
narrow histone mark
283
broad histone mark
163
control
77
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
240
October, 2019
228
August, 2021
227
August, 2017
193
May, 2020
162
June, 2019
120
July, 2018
115
May, 2019
101
February, 2021
82
November, 2017
80
April, 2019
76
February, 2023
67
July, 2019
66
May, 2022
51
October, 2018
48
December, 2017
40
May, 2024
39
May, 2021
November, 2019
35
March, 2020
25
November, 2018
23
February, 2020
22
October, 2017
14
May, 2023
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
Available data
1369
bam
1270
bigWig
950
bed narrowPeak
600
tsv
551
bigBed narrowPeak
334
fastq
230
tagAlign
210
bed broadPeak
199
bed bed3+
174
bigBed broadPeak
157
txt
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2087
Homo sapiens
Biosample type
2094
tissue
635
cell line
521
primary cell
292
in vitro differentiated cells
7
stem cell
Organ
connective tissue
487
adipose tissue
436
pancreas
361
liver
313
heart
265
brain
252
kidney
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
2094
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1339
GRCh38
1232
hg19
Lab
1835
AMP-T2D consortium
142
Katalin Susztak, Upenn
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
25
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
14
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
November, 2019
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
2094 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
snATAC-seq
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
68
266
38
1
6
4
2
1
1
1
4
liver
145
167
20
2
1
1
3
1
1
1
kidney
27
49
75
13
17
1
1
6
1
bone element
84
heart left ventricle
35
3
2
3
18
1
4
1
1
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