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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
136
ChIP-seq
18
ATAC-seq
18
total RNA-seq
4
pCHi-C
2
Hi-C
Assay category
136
DNA binding
18
DNA accessibility
18
Transcription
2
3D chromatin structure
Target of assay
125
histone
125
histone modification
116
narrow histone mark
11
control
9
broad histone mark
Date released
539
February, 2021
284
August, 2017
229
August, 2021
193
May, 2020
173
October, 2019
131
June, 2019
120
July, 2018
108
May, 2019
82
November, 2017
80
April, 2019
77
February, 2023
74
October, 2018
72
July, 2019
66
May, 2022
48
December, 2017
40
May, 2024
40
November, 2019
39
May, 2021
36
March, 2020
26
November, 2018
23
October, 2017
22
February, 2020
15
May, 2023
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
119
bam
108
bigWig
103
bed narrowPeak
49
tagAlign
4
tsv
2
hic
1
bed broadPeak
1
bedpe
1
bedpe bed3+
1
bigBed narrowPeak
1
fastq
1
tagAlign bed3+
Organism
178
Homo sapiens
Biosample type
178
tissue
34
primary cell
30
cell line
8
in vitro differentiated cells
Organ
86
brain
limb
42
nerve
26
artery
26
blood vessel
26
vasculature
21
eye
8
heart
8
pancreas
6
liver
4
gonad
4
kidney
4
ovary
2
connective tissue
2
pituitary gland
1
adipose tissue
1
lymph node
1
skin of body
Project
178
AMP
Genome assembly (visualization)
114
hg19
111
GRCh38
Lab
173
AMP-T2D consortium
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
2
inconsistent ontology term
organ_slims!
limb
BIOSAMPLE
ASSAY
178 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
pCHi-C
Hi-C
tissue
islet of Langerhans
20
17
14
4
1
heart
5
2
1
brain
5
1
liver
5
1
kidney
4
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