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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
68
DNase-seq
50
total RNA-seq
27
ChIP-seq
17
single cell RNA-seq
6
snATAC-seq
3
snDrop-seq
2
RNA microarray
1
FAIRE-seq
1
Hi-C
1
RRBS
1
small RNA-seq
Assay category
150
DNA accessibility
68
Transcription
27
DNA binding
1
3D chromatin structure
1
DNA methylation
Target of assay
20
histone
20
histone modification
10
broad histone mark
10
narrow histone mark
6
control
1
RNA binding protein
1
transcription factor
Date released
128
August, 2021
68
June, 2019
23
April, 2019
14
May, 2023
8
February, 2021
4
July, 2019
4
October, 2019
3
December, 2019
Available data
153
bed narrowPeak
98
bam
91
bigWig
87
bigBed narrowPeak
68
bed bed3+
68
bed broadPeak
68
bigBed broadPeak
64
xls
62
txt
12
tsv
5
csv
1
bed bedMethyl
1
bigBed bedMethyl
1
hic
Organism
252
Homo sapiens
Biosample type
252
tissue
80
cell line
36
primary cell
Organ
547
connective tissue
488
adipose tissue
475
pancreas
361
liver
313
heart
265
brain
252
kidney
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
0
bodily fluid
Project
252
AMP
47
KPMP
Genome assembly (visualization)
165
GRCh38
92
hg19
Lab
142
Katalin Susztak, Upenn
110
AMP-T2D consortium
Audit category:
7
audit script error
BIOSAMPLE
ASSAY
252 results
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ATAC-seq
DNase-seq
total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
snDrop-seq
RNA microarray
FAIRE-seq
Hi-C
RRBS
small RNA-seq
tissue
kidney
75
13
49
27
17
6
1
1
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
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