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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
ChIP-seq
12
total RNA-seq
3
Hi-C
2
ATAC-seq
2
RRBS
2
pCHi-C
Assay category
21
DNA binding
12
Transcription
3
3D chromatin structure
2
DNA accessibility
2
DNA methylation
Target of assay
20
histone
20
histone modification
11
narrow histone mark
9
broad histone mark
1
control
Date released
12
February, 2020
12
November, 2017
7
October, 2017
5
July, 2019
3
October, 2019
2
March, 2020
1
February, 2023
Available data
bam
222
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
42
Homo sapiens
Biosample type
38
tissue
4
primary cell
Organ
182
heart
163
kidney
110
liver
92
bone element
89
connective tissue
70
pancreas
55
epithelium
54
eye
51
vasculature
50
blood vessel
48
adipose tissue
42
brain
39
artery
26
musculature of body
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
vein
1
adrenal gland
1
blood
1
bodily fluid
1
embryo
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
42
AMP
Genome assembly (visualization)
8
hg19
2
GRCh38
Lab
42
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bam
bed broadPeak
BIOSAMPLE
ASSAY
42 results
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ChIP-seq
total RNA-seq
Hi-C
ATAC-seq
RRBS
pCHi-C
tissue
brain
7
1
1
cingulate gyrus
5
layer of hippocampus
3
substantia nigra
2
1
Ammon's horn
1
1
+ See 15 more…
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
choroid plexus epithelial cell
1
See all biosamples
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