Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
269
ChIP-seq
24
total RNA-seq
12
ATAC-seq
7
Hi-C
4
small RNA-seq
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
1
WGBS
Assay category
269
DNA binding
31
Transcription
13
DNA accessibility
7
3D chromatin structure
3
DNA methylation
Target of assay
224
histone
224
histone modification
124
narrow histone mark
100
broad histone mark
48
control
Date released
151
October, 2019
79
November, 2017
35
May, 2019
23
July, 2019
15
February, 2020
13
October, 2017
6
February, 2021
2
March, 2020
1
February, 2023
Available data
357
bam
313
bigWig
295
bed narrowPeak
211
bigBed narrowPeak
118
tagAlign
bed broadPeak
74
bigBed broadPeak
71
bed bed3+
33
tsv
21
fastq
3
bed bedMethyl
3
bigBed bedMethyl
3
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
325
Homo sapiens
Biosample type
315
tissue
10
primary cell
Organ
739
pancreas
728
liver
673
connective tissue
488
adipose tissue
363
heart
346
epithelium
239
brain
229
kidney
219
vasculature
217
blood vessel
158
bone element
137
artery
86
limb
61
blood
61
bodily fluid
57
eye
50
musculature of body
41
nerve
37
embryo
24
spleen
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
325
AMP
Genome assembly (visualization)
231
GRCh38
187
hg19
Lab
325
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
2
missing controlled_by
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
325 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
small RNA-seq
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
WGBS
tissue
tibial nerve
35
5
1
tibial artery
23
1
1
layer of hippocampus
23
brain
17
1
1
1
temporal lobe
15
1
1
+ See 82 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
Purkinje cell
1
+ See 1 more…
See all biosamples
Download