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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1330total RNA-seq
  • 546ChIP-seq
  • 228single cell RNA-seq
  • 193ATAC-seq
  • 87RNA microarray
  • 40pCHi-C
  • 30Hi-C
  • 28WGBS
  • 21RRBS
  • 18small RNA-seq
  • 10MeRIP-seq
  • 8snATAC-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3DNase-seq
  • 3snDrop-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1DNAme array
  • 1MPRA
  • 1whole genome sequencing assay
Assay category
  • 1576Transcription
  • 546DNA binding
  • 204DNA accessibility
  • 50DNA methylation
  • 303D chromatin structure
  • 1DNA sequencing
Target of assay
  • 343control
  • 166histone
  • 166histone modification
  • 85narrow histone mark
  • 81broad histone mark
  • 45transcription factor
  • 9RNA binding protein
  • 5nucleotide modification
  • 1recombinant protein
Date released
  • 647February, 2021
  • 269August, 2017
  • 269May, 2020
  • 213August, 2021
  • 198May, 2021
  • 168July, 2018
  • 125October, 2019
  • 101July, 2019
  • 93November, 2017
  • 57March, 2020
  • 49April, 2018
  • 41February, 2023
  • 31October, 2018
  • 28May, 2022
  • 27September, 2018
  • 25February, 2020
  • 24November, 2019
  • 23February, 2018
  • 23May, 2019
  • 22December, 2017
  • 15April, 2019
  • 15May, 2023
  • 15November, 2018
  • 14November, 2020
  • 11October, 2017
  • 10December, 2019
  • 9January, 2019
  • 8January, 2018
  • 8June, 2019
  • 6September, 2017
  • 5December, 2018
  • 5March, 2019
  • 4August, 2018
  • 3June, 2018
  • 1August, 2022
  • 1October, 2022
Available data
  • 3206bam
  • 2973bigWig
  • bed narrowPeak
  • 1496tsv
  • 1189fastq
  • 1042bigBed narrowPeak
  • 322bed broadPeak
  • 314tagAlign
  • 285bigBed broadPeak
  • 273bed bed3+
  • 161txt
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 20bedpe bed3+
  • 19hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 2559Homo sapiens
Biosample type
  • 1698tissue
  • 348primary cell
  • 262in vitro differentiated cells
  • 249cell line
  • 6stem cell
Organ
  • 608connective tissue
  • 550pancreas
  • 478adipose tissue
  • 350liver
  • 219epithelium
  • 202heart
  • 150bone element
  • 124kidney
  • 103vasculature
  • 101blood vessel
  • 83brain
  • 67artery
  • 36musculature of body
  • 30limb
  • 28eye
  • 23embryo
  • 16nerve
  • 11spleen
  • 9vein
  • 8skeleton
  • 7blood
  • 7bodily fluid
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 1adrenal gland
  • 1esophagus
  • 1large intestine
  • 1lung
  • 1lymph node
  • 1mammary gland
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 2563AMP
  • 324HPAP
  • 156T1D
  • 47KPMP
  • 19LungMap
  • 4community
  • 1ITG
Genome assembly (visualization)
  • 1514hg19
  • 1386GRCh38
  • 5hg18
Lab
  • 2365AMP-T2D consortium
  • 78Katalin Susztak, Upenn
  • 59Kyle Gaulton, UCSD
  • 24Bing Ren, UCSD
  • 20Karen Mohlke, UNC
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 3Struan F.A. Grant, CHOP
  • 2Mark McCarthy, Oxford
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 283inconsistent ontology term
  • 12audit script error
Audit category:
  • 41missing controlled_by
Audit category:
  • 2inconsistent control read length
  • 1inconsistent assembly
files.file_type!
  • bed narrowPeak
BIOSAMPLE
ASSAY

2563 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
RNA microarray
pCHi-C
Hi-C
WGBS
RRBS
small RNA-seq
MeRIP-seq
snATAC-seq
GRO-seq
STARR-seq
Capture-C
DNase-seq
snDrop-seq
CRISPR genome editing followed by sgRNA sequencing
DNAme array
MPRA
...and 1 more
tissue
adipose tissue3821213
islet of Langerhans2855162043141
liver16763111311
kidney4971711116
bone element84
primary cell
pancreatic alpha cell10612
pancreatic beta cell10612
naive thymus-derived CD4-positive, alpha-beta T cell1222
CD4-positive, alpha-beta memory T cell22
pancreatic acinar cell412
in vitro differentiated cells
cardiomyocytes59
embryonic stem cell73851
adipocyte52571
cardiac precursors (cardiac muscle cell)191
neural progenitor cell78
cell line
HepG214712212
EndoC_BH1312181621
smooth muscle cell of the coronary artery522
H1-hESC8
Panc171
stem cell
hESC11
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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