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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
145
total RNA-seq
100
ATAC-seq
84
ChIP-seq
1
Hi-C
1
pCHi-C
Assay category
145
Transcription
100
DNA accessibility
84
DNA binding
1
3D chromatin structure
Target of assay
28
transcription factor
27
control
27
histone
27
histone modification
27
narrow histone mark
2
RNA binding protein
2
chromatin remodeller
Date released
670
February, 2021
396
August, 2017
342
November, 2017
305
October, 2019
296
May, 2020
168
July, 2018
163
May, 2021
151
August, 2021
120
May, 2019
108
July, 2019
103
February, 2023
94
December, 2017
80
April, 2019
79
November, 2018
76
October, 2018
73
September, 2018
61
November, 2019
57
March, 2020
49
April, 2018
39
February, 2018
35
December, 2018
31
June, 2019
30
January, 2019
25
February, 2020
22
October, 2017
11
September, 2017
10
December, 2019
8
January, 2018
5
November, 2020
4
August, 2018
3
June, 2018
2
May, 2022
1
August, 2022
1
May, 2023
1
October, 2022
Available data
272
bam
245
bigWig
144
tsv
57
bed narrowPeak
50
tagAlign
35
fastq
30
bigBed narrowPeak
Organism
331
Homo sapiens
Biosample type
200
tissue
102
primary cell
29
cell line
Organ
195
liver
27
blood
27
bodily fluid
7
spleen
Project
331
AMP
Genome assembly (visualization)
245
hg19
192
GRCh38
Lab
331
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
1
inconsistent control
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
331 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
Hi-C
pCHi-C
tissue
liver
143
50
spleen
7
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
CD8-positive, alpha-beta T cell
2
+ See 24 more…
cell line
GM12878
27
HepG2
1
1
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