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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ChIP-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
28
DNA binding
24
Transcription
5
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
histone
184
histone modification
114
narrow histone mark
70
broad histone mark
31
control
Date released
18
July, 2019
15
November, 2017
12
February, 2020
9
October, 2019
4
October, 2017
3
May, 2019
2
March, 2020
1
February, 2023
Available data
77
bam
56
bigWig
36
bed narrowPeak
36
bigBed narrowPeak
35
bed bed3+
35
bed broadPeak
bigBed broadPeak
26
tsv
19
tagAlign
11
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
64
Homo sapiens
Biosample type
54
tissue
10
primary cell
Organ
640
liver
606
pancreas
596
connective tissue
457
adipose tissue
266
heart
259
epithelium
199
kidney
158
bone element
152
vasculature
150
blood vessel
117
artery
64
brain
60
blood
60
bodily fluid
54
eye
37
limb
30
musculature of body
25
embryo
18
spleen
17
nerve
16
skeleton
5
vein
2
intestine
2
pericardium
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
64
AMP
Genome assembly (visualization)
22
hg19
14
GRCh38
Lab
64
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
bigBed broadPeak
organ_slims!
small intestine
target.investigated_as!
histone
BIOSAMPLE
ASSAY
64 results
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ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
3
1
1
1
cerebellum (Hemisphere)
2
1
1
1
frontal cortex
2
1
1
temporal lobe
2
1
1
caudate nucleus
2
1
+ See 22 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
Purkinje cell
1
+ See 1 more…
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