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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
60
ChIP-seq
4
WGBS
3
total RNA-seq
2
ATAC-seq
2
pCHi-C
1
RNA microarray
1
RRBS
Assay category
60
DNA binding
5
DNA methylation
3
Transcription
2
DNA accessibility
Target of assay
30
control
30
histone
30
histone modification
20
broad histone mark
10
narrow histone mark
Date released
40
August, 2017
18
October, 2018
3
January, 2019
3
November, 2018
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
July, 2019
1
March, 2020
1
May, 2023
1
November, 2019
Available data
503
bam
bigWig
402
tsv
104
fastq
67
bed narrowPeak
64
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed bedMethyl
3
bed broadPeak
3
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
72
Homo sapiens
Biosample type
66
tissue
6
cell line
1
in vitro differentiated cells
Organ
176
kidney
169
heart
169
liver
153
pancreas
113
connective tissue
100
bone element
81
epithelium
81
vasculature
80
blood vessel
66
adipose tissue
64
brain
56
artery
55
eye
31
limb
28
musculature of body
16
skeleton
12
nerve
9
spleen
8
embryo
7
vein
6
blood
6
bodily fluid
5
gonad
5
ovary
2
intestine
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
73
AMP
8
T1D
Genome assembly (visualization)
4
hg19
2
GRCh38
Lab
73
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
bigWig
BIOSAMPLE
ASSAY
73 results
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ChIP-seq
WGBS
total RNA-seq
ATAC-seq
pCHi-C
RNA microarray
RRBS
tissue
subcutaneous abdominal adipose tissue
35
3
subcutaneous adipose tissue
10
1
1
omental fat pad
8
1
adipose tissue
1
1
1
1
1
adipose tissue(adipose white tissue)
1
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cell line
GM12878
6
in vitro differentiated cells
white fat cell
1
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