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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 481ChIP-seq
  • 345ATAC-seq
  • 150total RNA-seq
  • 122single cell RNA-seq
  • 87RNA microarray
  • 40pCHi-C
  • 25Hi-C
  • 21RRBS
  • 11WGBS
  • 10MeRIP-seq
  • 9snATAC-seq
  • 5STARR-seq
  • 4Capture-C
  • 3DNase-seq
  • 3snDrop-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1DNAme array
  • 1MPRA
  • 1whole genome sequencing assay
Assay category
  • 481DNA binding
  • 357DNA accessibility
  • 272Transcription
  • 33DNA methylation
  • 253D chromatin structure
  • 1DNA sequencing
Target of assay
  • 320control
  • 148histone
  • 148histone modification
  • 74broad histone mark
  • 74narrow histone mark
  • 18transcription factor
  • 8RNA binding protein
  • 5nucleotide modification
  • 1recombinant protein
Date released
  • 272August, 2021
  • 139August, 2017
  • 119February, 2021
  • 107October, 2019
  • 103February, 2023
  • 81May, 2020
  • 79May, 2021
  • 72November, 2017
  • 46May, 2022
  • 42March, 2020
  • 30November, 2019
  • 29October, 2018
  • 25February, 2020
  • 23July, 2019
  • 23May, 2019
  • 22December, 2017
  • 15April, 2019
  • 15May, 2023
  • 11November, 2020
  • 9October, 2017
  • 8February, 2018
  • 8June, 2019
  • 8November, 2018
  • 6September, 2017
  • 5December, 2018
  • 5December, 2019
  • 5March, 2019
  • 4January, 2019
  • 4July, 2018
  • 1August, 2018
  • 1August, 2022
  • 1July, 2025
  • 1October, 2022
  • 1September, 2018
Available data
  • 3206bam
  • bigWig
  • 1729bed narrowPeak
  • 1497tsv
  • 1189fastq
  • 1042bigBed narrowPeak
  • 322bed broadPeak
  • 314tagAlign
  • 285bigBed broadPeak
  • 274bed bed3+
  • 161txt
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 20bedpe bed3+
  • 19hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tbi
  • 1vcf
Organism
  • 1315Homo sapiens
Biosample type
  • 911tissue
  • 136primary cell
  • 135in vitro differentiated cells
  • 133cell line
  • 5stem cell
Organ
  • 176kidney
  • 169heart
  • 169liver
  • 153pancreas
  • 113connective tissue
  • 100bone element
  • 81epithelium
  • 81vasculature
  • 80blood vessel
  • 66adipose tissue
  • 64brain
  • 56artery
  • 55eye
  • 31limb
  • 29musculature of body
  • 16skeleton
  • 12nerve
  • 9spleen
  • 8embryo
  • 7vein
  • 6blood
  • 6bodily fluid
  • 5gonad
  • 5ovary
  • 2intestine
  • 1adrenal gland
  • 1esophagus
  • 1large intestine
  • 1lung
  • 1lymph node
  • 1mammary gland
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 1320AMP
  • 314HPAP
  • 58T1D
  • 47KPMP
  • 19LungMap
  • 4community
  • 1ITG
Genome assembly (visualization)
  • 197GRCh38
  • 194hg19
Lab
  • 1051AMP-T2D consortium
  • 142Katalin Susztak, Upenn
  • 67Kyle Gaulton, UCSD
  • 24Bing Ren, UCSD
  • 20Karen Mohlke, UNC
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 2Mark McCarthy, Oxford
  • 2Struan F.A. Grant, CHOP
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 160inconsistent ontology term
  • 12audit script error
  • 1inconsistent replicate
Audit category:
  • 3missing controlled_by
files.file_type!
  • bigWig
BIOSAMPLE
ASSAY

1320 results

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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
RNA microarray
pCHi-C
Hi-C
RRBS
WGBS
MeRIP-seq
snATAC-seq
STARR-seq
Capture-C
DNase-seq
snDrop-seq
CRISPR genome editing followed by sgRNA sequencing
DNAme array
MPRA
whole genome sequencing assay
tissue
kidney7754917116
islet of Langerhans42542543141
liver632011113
bone element84
coronary artery2351
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell2221
CD4-positive, alpha-beta memory T cell22
monocyte11311
macrophage11
endothelial cell of umbilical vein52
in vitro differentiated cells
embryonic stem cell3851
adipocyte20511
neural progenitor cell810
cardiomyocytes (cardiac muscle cell)1222
pancreatic endoderm6
cell line
HepG252192221
EndoC_BH12171621
smooth muscle cell of the coronary artery28
Panc17
GM128786
stem cell
hESC1
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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