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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
ChIP-seq
12
total RNA-seq
4
ATAC-seq
3
WGBS
3
small RNA-seq
1
DNase-seq
1
RNA microarray
1
pCHi-C
Assay category
36
DNA binding
15
Transcription
5
DNA accessibility
3
DNA methylation
Target of assay
31
histone
31
histone modification
20
broad histone mark
11
narrow histone mark
5
control
Date released
February, 2021
39
August, 2017
12
July, 2019
2
February, 2020
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2019
1
October, 2019
Available data
56
bam
fastq
39
bigWig
15
tsv
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
60
Homo sapiens
Biosample type
59
tissue
2
primary cell
Organ
332
pancreas
327
heart
323
liver
299
kidney
265
brain
164
vasculature
161
blood vessel
154
epithelium
127
connective tissue
116
limb
94
musculature of body
75
artery
61
adipose tissue
61
eye
43
nerve
22
vein
18
ureter
10
embryo
8
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
blood
1
bodily fluid
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
61
AMP
Genome assembly (visualization)
19
hg19
15
GRCh38
Lab
61
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
fastq
month_released!
December, 2018
February, 2021
BIOSAMPLE
ASSAY
61 results
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ChIP-seq
total RNA-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
RNA microarray
pCHi-C
tissue
subcutaneous abdominal adipose tissue
36
3
omental fat pad
5
1
1
subcutaneous adipose tissue
5
1
1
adipose tissue
1
3
1
adipose tissue(adipose white tissue)
1
primary cell
mesenchymal stem cell of adipose
1
1
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