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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
557
ChIP-seq
270
total RNA-seq
84
RNA microarray
63
ATAC-seq
10
DNase-seq
7
pCHi-C
5
WGBS
3
Hi-C
3
RRBS
3
small RNA-seq
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
557
DNA binding
274
Transcription
73
DNA accessibility
8
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
339
transcription factor
109
control
106
histone modification
105
histone
82
recombinant protein
63
narrow histone mark
59
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
153
February, 2021
63
December, 2017
54
August, 2017
53
November, 2018
40
May, 2022
39
February, 2023
35
August, 2021
28
October, 2019
10
July, 2019
9
June, 2019
5
December, 2019
5
January, 2019
3
March, 2020
2
February, 2020
1
December, 2018
Available data
754
bam
686
bigWig
482
bed narrowPeak
465
fastq
364
bigBed narrowPeak
237
tsv
88
txt
86
tagAlign
67
bed broadPeak
67
bigBed broadPeak
17
bed bed3+
5
bed bed3
4
bed bedMethyl
4
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
csv
hdf5
1
vcf
Organism
1009
Homo sapiens
Biosample type
575
tissue
401
cell line
18
primary cell
15
in vitro differentiated cells
Organ
790
liver
759
pancreas
682
connective tissue
491
adipose tissue
393
heart
366
epithelium
307
kidney
283
brain
234
vasculature
228
blood vessel
158
bone element
141
artery
122
limb
96
musculature of body
61
blood
61
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
1009
AMP
1
T1D
Genome assembly (visualization)
728
hg19
603
GRCh38
Lab
938
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
85
inconsistent ontology term
27
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
files.file_type!
hdf5
BIOSAMPLE
ASSAY
1009 results
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ChIP-seq
total RNA-seq
RNA microarray
ATAC-seq
DNase-seq
pCHi-C
WGBS
Hi-C
RRBS
small RNA-seq
STARR-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
145
167
20
2
1
3
1
1
1
1
bone element
84
bone tissue
58
islet of Langerhans
2
14
1
4
retina
3
15
3
+ See 14 more…
cell line
HepG2
378
14
1
2
1
2
2
1
primary cell
hepatocyte
4
5
1
1
retinal pigment epithelial cell
3
1
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
in vitro differentiated cells
hepatocyte
15
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