Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 1709candidate regulatory elements
  • 1218target gene predictions
  • 977histone modifications
  • 944chromatin state
  • 817binding sites
  • 643accessible chromatin
  • 141eQTL
  • 140variant allelic effects
  • 43gene expression
  • 11caQTL
  • 5hQTL
  • 5sQTL
  • 3meQTL
  • 3other
  • 2Fine-mapped variants
  • 2variant to gene
  • 1pQTL
Date released
  • 2511September, 2022
  • 2412February, 2021
  • 310February, 2024
  • 301May, 2021
  • 289June, 2020
  • 155May, 2020
  • 106January, 2022
  • 99October, 2022
  • 74August, 2021
  • 72January, 2020
  • 49March, 2020
  • 49May, 2022
  • 44November, 2022
  • 38May, 2024
  • 35August, 2017
  • 30February, 2023
  • 17February, 2020
  • 14November, 2019
  • 14October, 2019
  • 9August, 2018
  • 9May, 2019
  • 8April, 2019
  • 5September, 2023
  • 4March, 2023
  • 3September, 2018
  • 2November, 2020
  • 1August, 2020
  • 1August, 2022
  • 1February, 2025
  • 1June, 2021
Available data
  • 5671bed bed3+
  • tsv
  • 869bed bed9
  • 277bigWig
  • 108txt
  • 40bigBed bed9
  • 34bed bed9+
  • 24csv
  • 16bigBed narrowPeak
  • 4bam
  • 3bed gappedPeak
  • 3xls
Organism
  • 6618Homo sapiens
Collection Tags
  • 2499EpiMap
  • 1848ChIP-Atlas
  • 948ENCODE
  • 458DGA
  • 270T1D
  • 181BLUEPRINT
  • 1744DN
  • 111T2D
  • 101eQTLCatalogue
  • 94 T2DKP
  • 88CMDGA
  • 85AMP
  • 68T2DKP
  • 26FNIH_projects-heart
  • 12FNIH_projects-liver
  • 12HPAP
  • 12ROADMAP
Biosample type
  • 2436tissue
  • 2321cell line
  • 1507primary cell
  • 395in vitro differentiated cells
  • 4stem cell
Organ
  • 478epithelium
  • 400brain
  • 398kidney
  • 350musculature of body
  • 344connective tissue
  • 298lung
  • 267intestine
  • 227limb
  • 218heart
  • 217bodily fluid
  • 206blood
  • 203embryo
  • 196vasculature
  • 192skin of body
  • 166large intestine
  • 161pancreas
  • 152blood vessel
  • 143extraembryonic component
  • 125liver
  • 108stomach
  • 103eye
  • 82bone element
  • 81mammary gland
  • 80small intestine
  • 79uterus
  • 77prostate gland
  • 71placenta
  • 67adipose tissue
  • 64penis
  • 64ureter
  • 62adrenal gland
  • 62lymph node
  • 59artery
  • 48thymus
  • 46gonad
  • 39esophagus
  • 38spinal cord
  • 33spleen
  • 25testis
  • 23lymphoid tissue
  • 22vein
  • 20ovary
  • 20thyroid gland
  • 19nerve
  • 18mouth
  • 18skeleton
  • 15lymphatic vessel
  • 13bronchus
  • 12breast
  • 12pituitary gland
  • 10bone marrow
  • 9tongue
  • 9urinary bladder
  • 9vagina
  • 5trachea
  • 4nose
  • 1pericardium
Project
  • 6664AMP
  • 333ENCODE
  • 60T1D
  • 19LungMap
  • 11community
  • 5ITG
Genome assembly (visualization)
  • 6491hg19
  • 1467GRCh38
  • 4hg18
files.file_type!
  • tsv
BIOSAMPLE
TYPE

6664 results

search-icontable-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
histone modifications
chromatin state
binding sites
accessible chromatin
eQTL
variant allelic effects
gene expression
caQTL
hQTL
sQTL
meQTL
other
Fine-mapped variants
variant to gene
pQTL
tissue
heart3720121152
stomach402111931
kidney291421611011
brain29163181221
lung3317161
cell line
HeLa-S355531
A549211911821
H1-hESC1391121
K5627231721
MCF-7962531
primary cell
monocyte1861174211
common myeloid progenitor, CD34-positive271413
CD8-positive, alpha-beta T cell733012
B cell171082
CD4-positive, alpha-beta memory T cell1499
in vitro differentiated cells
hematopoietic multipotent progenitor cell191011011
neural progenitor cell5515410
adipocyte461614
embryonic stem cell11516
mesenchymal stem cell331211
stem cell
H1-hESC1
mesenchymal stem cell1
mesendoderm1
undifferentiated ESC (H9 cell line)1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego