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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
total RNA-seq
13
single cell RNA-seq
11
ATAC-seq
1
MPRA
1
snATAC-seq
Assay category
68
Transcription
12
DNA accessibility
Date released
57
August, 2021
9
February, 2023
7
February, 2021
7
May, 2022
1
October, 2022
Available data
3140
bam
2915
bigWig
1721
bed narrowPeak
1438
tsv
1189
fastq
1042
bigBed narrowPeak
322
bed broadPeak
314
tagAlign
285
bigBed broadPeak
273
bed bed3+
73
txt
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
20
bedpe bed3+
19
hic
8
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
80
Homo sapiens
Biosample type
70
tissue
8
in vitro differentiated cells
2
cell line
1
primary cell
Organ
bone element
62
kidney
8
skeleton
6
connective tissue
6
pancreas
1
brain
1
liver
1
musculature of body
Project
81
AMP
Genome assembly (visualization)
12
hg19
2
GRCh38
Lab
57
Katalin Susztak, Upenn
15
AMP-T2D consortium
6
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
6
audit script error
1
inconsistent ontology term
1
inconsistent replicate
organ_slims!
bone element
BIOSAMPLE
ASSAY
81 results
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Clear Filters
total RNA-seq
single cell RNA-seq
ATAC-seq
MPRA
snATAC-seq
tissue
kidney
49
13
islet of Langerhans
6
brain
1
skeletal muscle tissue
1
in vitro differentiated cells
chondrocyte
5
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
HepG2
1
MIN6
1
primary cell
osteoblast
1
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