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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
53
total RNA-seq
13
single cell RNA-seq
7
ATAC-seq
1
MPRA
1
snATAC-seq
Assay category
66
Transcription
8
DNA accessibility
Date released
93
February, 2021
57
August, 2021
7
February, 2023
1
May, 2022
1
October, 2022
Available data
bam
2973
bigWig
1729
bed narrowPeak
1496
tsv
1189
fastq
1042
bigBed narrowPeak
322
bed broadPeak
314
tagAlign
285
bigBed broadPeak
273
bed bed3+
161
txt
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
20
bedpe bed3+
19
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
158
Homo sapiens
Biosample type
151
tissue
7
in vitro differentiated cells
1
cell line
Organ
88
bone element
62
kidney
4
connective tissue
4
skeleton
1
musculature of body
Project
159
AMP
Genome assembly (visualization)
8
hg19
Lab
99
AMP-T2D consortium
57
Katalin Susztak, Upenn
3
Struan F.A. Grant, CHOP
Audit category:
85
inconsistent ontology term
6
audit script error
files.file_type!
bam
BIOSAMPLE
ASSAY
159 results
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RNA microarray
total RNA-seq
single cell RNA-seq
ATAC-seq
MPRA
snATAC-seq
tissue
bone element
84
kidney
49
13
acetabular part of hip bone
1
ilium
1
ischium
1
+ See 2 more…
in vitro differentiated cells
adipocyte
4
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
MIN6
1
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