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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
204
DNase-seq
61
ChIP-seq
2
ATAC-seq
Assay category
206
DNA accessibility
61
DNA binding
Target of assay
47
transcription factor
28
histone
28
histone modification
14
broad histone mark
narrow histone mark
7
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
57
November, 2017
August, 2017
9
November, 2018
9
October, 2019
3
October, 2017
1
March, 2019
1
November, 2020
Available data
2615
bam
2365
bigWig
1406
tsv
1252
bed narrowPeak
863
bigBed narrowPeak
844
fastq
267
bed broadPeak
261
bigBed broadPeak
233
bed bed3+
161
txt
124
tagAlign
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
20
bedpe bed3+
19
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
2
ibed
1
bedpe
1
vcf
Organism
267
Homo sapiens
Biosample type
182
tissue
53
cell line
32
primary cell
Organ
78
kidney
57
liver
39
brain
36
limb
33
musculature of body
30
heart
20
epithelium
18
ureter
15
vasculature
12
blood vessel
9
pancreas
8
connective tissue
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
267
AMP
Genome assembly (visualization)
251
GRCh38
243
hg19
Lab
265
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
8
inconsistent control read length
month_released!
August, 2017
organ_slims!
spinal cord
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
267 results
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DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
2
kidney
13
muscle of leg
13
+ See 42 more…
cell line
HepG2
52
Panc1
1
primary cell
endothelial cell of umbilical vein
2
2
cardiac fibroblast
3
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
+ See 17 more…
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