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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
164
ChIP-seq
19
ATAC-seq
4
DNase-seq
1
FAIRE-seq
Assay category
164
DNA binding
24
DNA accessibility
Target of assay
140
histone modification
139
histone
73
broad histone mark
65
narrow histone mark
24
transcription factor
7
RNA binding protein
3
chromatin remodeller
Date released
313
November, 2017
173
October, 2019
142
August, 2017
130
June, 2019
93
May, 2019
73
November, 2018
72
December, 2017
65
February, 2023
48
May, 2021
47
April, 2019
46
September, 2018
45
October, 2018
42
August, 2021
40
May, 2024
38
May, 2022
37
November, 2019
30
December, 2018
27
May, 2020
23
February, 2021
21
January, 2019
16
February, 2018
12
October, 2017
6
July, 2019
5
September, 2017
2
November, 2020
Available data
360
fastq
354
bam
344
bigWig
188
bed narrowPeak
115
tsv
85
tagAlign
56
bigBed narrowPeak
41
bed broadPeak
33
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
1
csv
Organism
182
Homo sapiens
Biosample type
79
primary cell
66
tissue
43
in vitro differentiated cells
Organ
95
pancreas
52
epithelium
46
connective tissue
18
liver
13
musculature of body
3
adipose tissue
Project
188
AMP
Genome assembly (visualization)
188
hg19
164
GRCh38
Lab
188
AMP-T2D consortium
Audit category:
33
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
organ_slims!
kidney
BIOSAMPLE
ASSAY
188 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
primary cell
pancreatic ductal cell
13
4
skeletal muscle myoblast
14
2
pancreatic acinar cell
8
4
pancreatic beta cell
7
5
pancreatic alpha cell
7
4
+ See 1 more…
tissue
islet of Langerhans
18
1
1
liver
17
skeletal muscle tissue
13
pancreas
12
adipose tissue
1
+ See 3 more…
in vitro differentiated cells
adipocyte
42
1
See all biosamples
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