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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
467
ChIP-seq
23
ATAC-seq
5
DNase-seq
Assay category
467
DNA binding
28
DNA accessibility
Target of assay
380
transcription factor
82
histone modification
81
histone
81
recombinant protein
66
RNA binding protein
52
narrow histone mark
33
chromatin remodeller
29
broad histone mark
2
other context
2
other post-translational modification
Date released
249
November, 2017
63
November, 2018
50
December, 2017
27
December, 2018
27
May, 2020
20
May, 2022
18
August, 2017
17
August, 2021
15
January, 2019
6
October, 2019
2
June, 2019
1
February, 2021
Available data
741
bam
677
bigWig
525
fastq
495
bed narrowPeak
412
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
495
Homo sapiens
Biosample type
362
cell line
113
tissue
14
in vitro differentiated cells
6
primary cell
Organ
441
liver
210
pancreas
203
brain
191
heart
183
kidney
149
epithelium
133
vasculature
129
blood vessel
92
limb
75
connective tissue
74
artery
60
musculature of body
54
blood
54
bodily fluid
33
eye
27
nerve
18
ureter
14
embryo
14
spleen
13
adipose tissue
13
vein
8
bone element
8
skeleton
1
pituitary gland
Project
495
AMP
Genome assembly (visualization)
491
hg19
421
GRCh38
Lab
461
AMP-T2D consortium
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
Audit category:
28
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
25
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
495 results
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ChIP-seq
ATAC-seq
DNase-seq
cell line
HepG2
307
1
GM12878
54
tissue
liver
82
20
2
right lobe of liver
7
1
1
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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