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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
62
ChIP-seq
30
DNase-seq
1
FAIRE-seq
Assay category
62
DNA binding
31
DNA accessibility
Target of assay
165
histone
165
histone modification
narrow histone mark
61
broad histone mark
1
RNA binding protein
1
transcription factor
Date released
39
November, 2017
28
June, 2019
15
May, 2019
5
October, 2017
3
October, 2019
2
November, 2018
1
July, 2019
Available data
132
bam
109
bigWig
93
bed narrowPeak
90
bigBed narrowPeak
64
tagAlign
35
bed broadPeak
32
bed bed3+
31
bigBed broadPeak
26
tsv
13
fastq
2
hdf5
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
Organism
93
Homo sapiens
Biosample type
89
tissue
4
primary cell
Organ
390
liver
168
kidney
155
pancreas
151
heart
vasculature
105
blood vessel
103
epithelium
97
brain
78
limb
68
artery
57
connective tissue
53
blood
53
bodily fluid
49
musculature of body
32
eye
19
nerve
18
ureter
12
spleen
11
adipose tissue
8
bone element
8
skeleton
8
vein
7
embryo
Project
93
AMP
Genome assembly (visualization)
92
GRCh38
47
hg19
Lab
93
AMP-T2D consortium
Audit category:
2
missing controlled_by
organ_slims!
vasculature
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
93 results
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ChIP-seq
DNase-seq
FAIRE-seq
tissue
brain
8
14
layer of hippocampus
10
caudate nucleus
8
1
substantia nigra
8
temporal lobe
8
+ See 14 more…
primary cell
astrocyte of the cerebellum
1
1
astrocyte of the hippocampus
1
brain pericyte
1
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