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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1237ChIP-seq
  • 278ATAC-seq
  • 209DNase-seq
  • 5FAIRE-seq
Assay category
  • 1237DNA binding
  • 492DNA accessibility
Target of assay
  • 763histone modification
  • 762histone
  • 469transcription factor
  • 385narrow histone mark
  • 376broad histone mark
  • 105RNA binding protein
  • 88recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 313November, 2017
  • 210June, 2019
  • 189October, 2019
  • 142August, 2017
  • 106August, 2021
  • 97May, 2019
  • 73November, 2018
  • 72December, 2017
  • 65April, 2019
  • 65February, 2023
  • 48May, 2021
  • 46September, 2018
  • 45October, 2018
  • 40May, 2024
  • 38May, 2022
  • 37November, 2019
  • 30December, 2018
  • 27May, 2020
  • 23February, 2021
  • 21January, 2019
  • 16February, 2018
  • 12October, 2017
  • 7July, 2019
  • 5September, 2017
  • 2November, 2020
Available data
  • 3206bam
  • 2973bigWig
  • 1729bed narrowPeak
  • 1496tsv
  • 1189fastq
  • 1042bigBed narrowPeak
  • 322bed broadPeak
  • 314tagAlign
  • 285bigBed broadPeak
  • 273bed bed3+
  • 161txt
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 20bedpe bed3+
  • 19hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 1723Homo sapiens
Biosample type
  • 982tissue
  • 402cell line
  • 211primary cell
  • 132in vitro differentiated cells
  • 2stem cell
Organ
  • 441liver
  • 210pancreas
  • 203brain
  • 191heart
  • 183kidney
  • 149epithelium
  • 133vasculature
  • 129blood vessel
  • 92limb
  • 75connective tissue
  • 74artery
  • 60musculature of body
  • 54blood
  • 54bodily fluid
  • 33eye
  • 27nerve
  • 18ureter
  • 14embryo
  • 14spleen
  • 13adipose tissue
  • 13vein
  • 8bone element
  • 8skeleton
  • 1pituitary gland
Project
  • 1729AMP
  • 88T1D
Genome assembly (visualization)
  • 1544GRCh38
  • 1510hg19
Lab
  • 1539AMP-T2D consortium
  • 64Katalin Susztak, Upenn
  • 48Kyle Gaulton, UCSD
  • 40Patrick T. Ellinor, Broad
  • 20Karen Mohlke, UNC
  • 14Bing Ren, UCSD
  • 4Struan F.A. Grant, CHOP
Audit category:
  • 61inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 48missing controlled_by
Audit category:
  • 54inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
BIOSAMPLE
ASSAY

1729 results

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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
liver82202
kidney2064131
islet of Langerhans183711
coronary artery3362
left cardiac atrium401
cell line
HepG23071
GM1287854
EndoC_BH1111
smooth muscle cell of the coronary artery48
Panc161
primary cell
CD8-positive, alpha-beta T cell30
pancreatic ductal cell134
skeletal muscle myoblast142
pancreatic beta cell77
endothelial cell of umbilical vein1021
in vitro differentiated cells
adipocyte4211
neural progenitor cell1310
hepatocyte14
pancreatic endoderm12
definitive endodermal cell6
stem cell
hESC2
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