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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
Hi-C
3
pCHi-C
Assay category
17
3D chromatin structure
Date released
11
March, 2020
3
August, 2021
3
October, 2019
1
August, 2018
1
March, 2019
1
November, 2019
Available data
2893
bam
2686
bigWig
1580
bed narrowPeak
1348
tsv
1001
fastq
966
bigBed narrowPeak
307
tagAlign
300
bed broadPeak
263
bigBed broadPeak
252
bed bed3+
161
txt
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
18
bedpe bed3+
16
hic
12
bed bed3
8
csv
7
bed bedgraph
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
20
Homo sapiens
Biosample type
12
tissue
7
in vitro differentiated cells
1
cell line
Organ
5
pancreas
3
blood vessel
epithelium
3
heart
3
vasculature
2
liver
2
musculature of body
2
vein
1
adipose tissue
1
connective tissue
1
kidney
Project
20
AMP
1
ITG
Genome assembly (visualization)
18
hg19
Lab
16
AMP-T2D consortium
3
Bing Ren, UCSD
1
Katalin Susztak, Upenn
Audit category:
6
inconsistent ontology term
organ_slims!
epithelium
BIOSAMPLE
ASSAY
20 results
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Hi-C
pCHi-C
tissue
islet of Langerhans
3
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
+ See 4 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
lymphocyte of B lineage (iPSC)
1
1
cardiac precursors (cardiac muscle cell)
1
white fat cell
1
cell line
HepG2
1
See all biosamples
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