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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
7
DNase-seq
4
ChIP-seq
1
FAIRE-seq
Assay category
8
DNA accessibility
4
DNA binding
Target of assay
46
histone
histone modification
27
broad histone mark
19
narrow histone mark
4
RNA binding protein
4
transcription factor
Date released
5
June, 2019
3
October, 2019
2
May, 2019
2
November, 2017
Available data
32
bam
22
bigWig
13
bed narrowPeak
12
bigBed narrowPeak
10
tsv
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
4
fastq
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
1
tar
Organism
12
Homo sapiens
Biosample type
9
primary cell
3
tissue
Organ
323
liver
82
kidney
53
blood
53
bodily fluid
47
epithelium
42
pancreas
38
heart
36
brain
36
limb
33
musculature of body
19
connective tissue
18
ureter
17
vasculature
14
blood vessel
9
adipose tissue
7
spleen
artery
5
eye
3
vein
2
nerve
Project
12
AMP
Genome assembly (visualization)
11
GRCh38
11
hg19
Lab
12
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
artery
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
12 results
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DNase-seq
ChIP-seq
FAIRE-seq
primary cell
endothelial cell of umbilical vein
2
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
kidney capillary endothelial cell
1
smooth muscle cell of the brain vasculature
1
tissue
ascending aorta
1
1
thoracic aorta
1
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