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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1302ChIP-seq
  • 1180total RNA-seq
  • 209DNase-seq
  • 126ATAC-seq
  • 106single cell RNA-seq
  • 18small RNA-seq
  • 17WGBS
  • 5FAIRE-seq
  • 5GRO-seq
  • 5Hi-C
Assay category
  • 1304Transcription
  • 1302DNA binding
  • 340DNA accessibility
  • 17DNA methylation
  • 53D chromatin structure
Target of assay
  • 781histone modification
  • 780histone
  • 496transcription factor
  • 396narrow histone mark
  • 383broad histone mark
  • 106RNA binding protein
  • 88recombinant protein
  • 36chromatin remodeller
  • 23control
  • 5other context
  • 5other post-translational modification
Date released
  • 551February, 2021
  • 334November, 2017
  • 272August, 2017
  • 215May, 2020
  • 210June, 2019
  • 207October, 2019
  • 167May, 2021
  • 164July, 2018
  • 97May, 2019
  • 85July, 2019
  • 80November, 2018
  • 72December, 2017
  • 72September, 2018
  • 65April, 2019
  • 49April, 2018
  • 47August, 2021
  • 47October, 2018
  • 40May, 2024
  • 31February, 2018
  • 31November, 2019
  • 30December, 2018
  • 26January, 2019
  • 20May, 2022
  • 15March, 2020
  • 14October, 2017
  • 8January, 2018
  • 5December, 2019
  • 5November, 2020
  • 5September, 2017
  • 3August, 2018
  • 3February, 2023
  • 3June, 2018
Available data
  • 3206bam
  • 2973bigWig
  • 1729bed narrowPeak
  • 1496tsv
  • 1189fastq
  • 1042bigBed narrowPeak
  • 322bed broadPeak
  • 314tagAlign
  • 285bigBed broadPeak
  • 273bed bed3+
  • 161txt
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 20bedpe bed3+
  • 19hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 2967Homo sapiens
Biosample type
  • 1770tissue
  • 518cell line
  • 423primary cell
  • 259in vitro differentiated cells
  • 3stem cell
Organ
  • 622liver
  • 607pancreas
  • 570connective tissue
  • 425adipose tissue
  • 287epithelium
  • 224heart
  • 222brain
  • 155vasculature
  • 150blood vessel
  • 131kidney
  • 91limb
  • 85artery
  • 68musculature of body
  • 58bone element
  • 55blood
  • 55bodily fluid
  • 31nerve
  • 29embryo
  • 18ureter
  • 16spleen
  • 15vein
  • 6eye
  • 1pericardium
  • 1pituitary gland
Project
  • 2973AMP
  • 186T1D
  • 10HPAP
Genome assembly (visualization)
  • 2830hg19
  • 2734GRCh38
  • 5hg18
Lab
  • 2853AMP-T2D consortium
  • 40Kyle Gaulton, UCSD
  • 40Patrick T. Ellinor, Broad
  • 20Karen Mohlke, UNC
  • 14Bing Ren, UCSD
  • 5Struan F.A. Grant, CHOP
  • 1Stephen Parker, UMich
Audit category:
  • 184inconsistent ontology term
  • 28inconsistent control
Audit category:
  • 86missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 4inconsistent assembly
BIOSAMPLE
ASSAY

2973 results

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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
single cell RNA-seq
small RNA-seq
WGBS
FAIRE-seq
GRO-seq
Hi-C
tissue
adipose tissue138122
islet of Langerhans272601361
liver821472201
bone tissue58
left cardiac atrium401
cell line
HepG232651
smooth muscle cell of the coronary artery452
GM12878541
EndoC_BH111312
H1-hESC8
primary cell
CD8-positive, alpha-beta T cell3322
pancreatic beta cell710712
pancreatic alpha cell710612
pancreatic ductal cell134410
pancreatic acinar cell84512
in vitro differentiated cells
cardiomyocytes359
adipocyte47413
neural progenitor cell137
cardiac precursors (cardiac muscle cell)19
pancreatic endoderm1241
stem cell
hESC21
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