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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
Hi-C
1
ChIP-seq
Assay category
16
3D chromatin structure
1
DNA binding
Target of assay
1
histone
1
histone modification
1
narrow histone mark
Date released
8
March, 2020
4
October, 2019
2
August, 2021
2
November, 2019
1
March, 2019
Available data
3026
bam
2823
bigWig
1600
bed narrowPeak
1428
tsv
1186
fastq
963
bigBed narrowPeak
309
bed broadPeak
308
tagAlign
272
bigBed broadPeak
262
bed bed3+
161
txt
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
18
bedpe bed3+
16
hic
12
bed bed3
8
csv
7
bed bedgraph
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
17
Homo sapiens
Biosample type
11
tissue
4
in vitro differentiated cells
2
cell line
Organ
4
pancreas
blood vessel
3
epithelium
3
heart
3
vasculature
2
liver
2
musculature of body
2
vein
1
brain
1
kidney
Project
17
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
17
hg19
1
GRCh38
Lab
14
AMP-T2D consortium
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
Audit category:
5
inconsistent ontology term
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
17 results
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Clear Filters
Hi-C
ChIP-seq
tissue
islet of Langerhans
2
psoas muscle
2
heart
1
heart left ventricle
1
heart right ventricle
1
+ See 4 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
cell line
EndoC_BH1
1
HepG2
1
See all biosamples
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