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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
Hi-C
Assay category
14
3D chromatin structure
Date released
8
March, 2020
3
October, 2019
2
August, 2021
November, 2019
1
March, 2019
Available data
2967
bam
2792
bigWig
1563
bed narrowPeak
1408
tsv
1186
fastq
963
bigBed narrowPeak
309
bed broadPeak
308
tagAlign
272
bigBed broadPeak
262
bed bed3+
161
txt
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
16
bedpe bed3+
14
hic
12
bed bed3
8
csv
7
bed bedgraph
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
14
Homo sapiens
Biosample type
9
tissue
4
in vitro differentiated cells
1
cell line
Organ
blood vessel
3
heart
3
vasculature
2
epithelium
2
liver
2
musculature of body
2
pancreas
2
vein
1
kidney
Project
14
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
14
hg19
Lab
11
AMP-T2D consortium
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
Audit category:
4
inconsistent ontology term
month_released!
November, 2019
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
14 results
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Hi-C
tissue
psoas muscle
2
heart
1
heart left ventricle
1
heart right ventricle
1
islet of Langerhans
1
+ See 3 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
cell line
HepG2
1
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