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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
308
ChIP-seq
64
ATAC-seq
Assay category
308
DNA binding
64
DNA accessibility
Target of assay
237
histone
237
histone modification
134
narrow histone mark
103
broad histone mark
66
control
5
transcription factor
Date released
88
August, 2021
85
August, 2017
78
November, 2017
50
May, 2020
49
October, 2019
14
October, 2017
6
May, 2021
2
February, 2021
Available data
3026
bam
2823
bigWig
1600
bed narrowPeak
1428
tsv
1186
fastq
963
bigBed narrowPeak
309
bed broadPeak
308
tagAlign
272
bigBed broadPeak
262
bed bed3+
161
txt
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
18
bedpe bed3+
hic
12
bed bed3
8
csv
7
bed bedgraph
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
365
Homo sapiens
Biosample type
302
tissue
40
in vitro differentiated cells
16
primary cell
14
cell line
Organ
118
brain
86
liver
64
kidney
22
connective tissue
19
pancreas
15
musculature of body
8
adipose tissue
7
epithelium
6
artery
blood vessel
6
heart
6
vasculature
1
pituitary gland
Project
372
AMP
84
T1D
Genome assembly (visualization)
222
GRCh38
150
hg19
Lab
308
AMP-T2D consortium
64
Katalin Susztak, Upenn
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
11
inconsistent control read length
2
inconsistent assembly
files.file_type!
hic
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
372 results
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Clear Filters
ChIP-seq
ATAC-seq
tissue
liver
70
kidney
64
substantia nigra
16
caudate nucleus
15
layer of hippocampus
15
+ See 44 more…
in vitro differentiated cells
neural progenitor cell
20
adipocyte
14
cardiomyocytes
3
pancreatic PP cell
3
primary cell
skeletal muscle myoblast
12
hepatocyte
4
cell line
HepG2
12
iPSC derived cell line
2
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