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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
324
total RNA-seq
80
single cell RNA-seq
2
ATAC-seq
2
small RNA-seq
1
pCHi-C
Assay category
406
Transcription
2
DNA accessibility
Date released
153
July, 2018
89
August, 2017
40
May, 2021
39
April, 2018
26
February, 2021
26
September, 2018
20
November, 2019
4
July, 2019
4
March, 2020
3
August, 2018
2
October, 2018
1
August, 2021
1
February, 2020
1
June, 2018
Available data
683
bam
607
bigWig
409
tsv
402
fastq
210
bed narrowPeak
91
bigBed narrowPeak
29
bed bed3+
21
bed broadPeak
19
tagAlign
7
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
4
bedpe bed3+
4
hic
1
bedpe
1
hdf5
Organism
409
Homo sapiens
Biosample type
275
tissue
102
primary cell
32
cell line
Organ
478
connective tissue
409
pancreas
401
adipose tissue
174
liver
168
heart
148
epithelium
68
blood vessel
vasculature
58
artery
58
bone element
26
brain
24
kidney
14
embryo
9
musculature of body
7
limb
5
eye
5
nerve
2
intestine
1
adrenal gland
1
esophagus
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
409
AMP
6
HPAP
2
T1D
Genome assembly (visualization)
406
hg19
404
GRCh38
Lab
408
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
37
inconsistent ontology term
organ_slims!
gonad
vasculature
BIOSAMPLE
ASSAY
409 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
small RNA-seq
pCHi-C
tissue
islet of Langerhans
261
6
1
body of pancreas
3
2
pancreas
1
1
primary cell
pancreatic alpha cell
10
12
pancreatic beta cell
10
12
pancreatic acinar cell
4
12
pancreatic ductal cell
4
10
pancreatic delta cell
11
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cell line
EndoC_BH1
31
1
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