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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 18ChIP-seq
  • 10total RNA-seq
  • 5STARR-seq
  • 3Hi-C
  • 1ATAC-seq
  • 1whole genome sequencing assay
Assay category
  • 18DNA binding
  • 10Transcription
  • 33D chromatin structure
  • 1DNA accessibility
  • 1DNA sequencing
Target of assay
  • 11transcription factor
  • 4control
  • 3histone
  • 3histone modification
  • 2narrow histone mark
  • 1RNA binding protein
  • 1broad histone mark
Date released
  • 36August, 2021
  • 2March, 2019
Available data
  • 14bed narrowPeak
  • 14bigWig
  • 10tsv
  • 2bedpe bed3+
  • 2hic
  • 1bedpe
  • 1vcf
Organism
  • 38Homo sapiens
Biosample type
  • 34cell line
  • 4tissue
Organ
  • 31liver
  • 4pancreas
  • 2kidney
Project
  • 38AMP
Genome assembly (visualization)
  • 17hg19
  • 1GRCh38
Lab
  • 3904AMP-T2D consortium
  • 142Katalin Susztak, Upenn
  • 107Kyle Gaulton, UCSD
  • 40Karen Mohlke, UNC
  • 40Patrick T. Ellinor, Broad
  • 38Bing Ren, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 7Struan F.A. Grant, CHOP
  • 2Mark McCarthy, Oxford
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 1inconsistent ontology term
BIOSAMPLE
ASSAY

38 results

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Clear Filters
ChIP-seq
total RNA-seq
STARR-seq
Hi-C
ATAC-seq
whole genome sequencing assay
cell line
HepG2189211
HEK293T2
Synthesized DNA1
tissue
islet of Langerhans121
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