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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
115
ChIP-seq
7
ATAC-seq
6
WGBS
3
small RNA-seq
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
115
DNA binding
9
DNA accessibility
6
DNA methylation
Target of assay
54
transcription factor
32
histone
32
histone modification
27
control
20
broad histone mark
12
narrow histone mark
9
RNA binding protein
4
chromatin remodeller
Date released
386
February, 2021
57
August, 2017
27
December, 2018
23
October, 2018
January, 2019
16
November, 2018
12
July, 2019
2
February, 2020
2
January, 2018
1
August, 2018
1
August, 2021
1
February, 2023
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2019
1
October, 2017
1
October, 2019
Available data
484
bam
465
bigWig
401
tsv
86
fastq
52
bed narrowPeak
49
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
533
Homo sapiens
Biosample type
488
tissue
43
cell line
2
primary cell
1
in vitro differentiated cells
Organ
786
liver
760
pancreas
683
connective tissue
491
adipose tissue
393
heart
368
epithelium
307
kidney
286
brain
236
vasculature
230
blood vessel
158
bone element
141
artery
122
limb
96
musculature of body
61
eye
43
blood
43
bodily fluid
43
nerve
37
embryo
22
vein
18
spleen
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
534
AMP
8
T1D
Genome assembly (visualization)
466
hg19
463
GRCh38
Lab
534
AMP-T2D consortium
Audit category:
1
inconsistent control
1
inconsistent ontology term
Audit category:
12
missing controlled_by
month_released!
January, 2019
BIOSAMPLE
ASSAY
534 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
1
2
white adipose tissue
12
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cell line
GM12878
42
1
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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