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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
ChIP-seq
34
DNase-seq
4
RRBS
4
total RNA-seq
2
ATAC-seq
2
Hi-C
2
WGBS
2
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
59
DNA binding
37
DNA accessibility
6
DNA methylation
5
Transcription
2
3D chromatin structure
Target of assay
39
histone
39
histone modification
24
broad histone mark
15
narrow histone mark
14
control
6
transcription factor
3
other context
3
other post-translational modification
Date released
43
June, 2019
26
August, 2017
July, 2019
9
November, 2018
7
December, 2018
7
January, 2019
7
May, 2019
6
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
1
October, 2017
Available data
79
bigWig
76
bam
74
bed narrowPeak
60
bigBed narrowPeak
47
bed broadPeak
35
bed bed3+
34
bigBed broadPeak
26
fastq
15
tagAlign
6
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
txt
Organism
111
Homo sapiens
Biosample type
100
tissue
11
primary cell
Organ
781
liver
754
pancreas
665
connective tissue
479
adipose tissue
368
heart
355
epithelium
296
kidney
268
brain
224
vasculature
219
blood vessel
158
bone element
138
artery
117
limb
86
musculature of body
61
blood
61
bodily fluid
60
eye
43
nerve
37
embryo
25
spleen
22
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
thymus
1
urinary bladder
Project
111
AMP
Genome assembly (visualization)
82
hg19
64
GRCh38
Lab
111
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
month_released!
July, 2019
organ_slims!
thymus
BIOSAMPLE
ASSAY
111 results
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ChIP-seq
DNase-seq
RRBS
total RNA-seq
ATAC-seq
Hi-C
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
1
spleen
20
1
1
2
1
muscle of leg
7
13
muscle of arm
17
psoas muscle
2
2
1
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primary cell
skeletal muscle satellite cell
8
skeletal muscle cell
2
1
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