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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
102
ChIP-seq
51
single cell RNA-seq
26
total RNA-seq
14
ATAC-seq
9
DNase-seq
7
WGBS
1
FAIRE-seq
Assay category
102
DNA binding
77
Transcription
24
DNA accessibility
7
DNA methylation
Target of assay
64
transcription factor
32
histone
32
histone modification
21
RNA binding protein
17
broad histone mark
16
recombinant protein
15
narrow histone mark
7
chromatin remodeller
6
control
3
other context
3
other post-translational modification
Date released
670
February, 2021
411
August, 2017
406
November, 2017
319
August, 2021
314
October, 2019
296
May, 2020
246
May, 2021
218
June, 2019
168
July, 2018
May, 2019
108
July, 2019
106
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
66
May, 2022
61
November, 2019
57
March, 2020
49
April, 2018
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
5
March, 2019
4
August, 2018
3
June, 2018
1
August, 2022
1
October, 2022
Available data
208
bam
205
fastq
201
bigWig
119
bed narrowPeak
87
bigBed narrowPeak
75
tsv
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
2
csv
Organism
210
Homo sapiens
Biosample type
117
primary cell
61
cell line
32
tissue
Organ
118
pancreas
94
epithelium
53
liver
15
blood
15
bodily fluid
9
spleen
3
connective tissue
2
brain
1
adipose tissue
Project
210
AMP
Genome assembly (visualization)
200
GRCh38
192
hg19
Lab
210
AMP-T2D consortium
Audit category:
35
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
month_released!
May, 2019
BIOSAMPLE
ASSAY
210 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
FAIRE-seq
primary cell
pancreatic ductal cell
13
6
4
4
pancreatic acinar cell
8
6
2
3
pancreatic beta cell
3
10
4
pancreatic alpha cell
3
10
3
pancreatic endocrine cell
11
+ See 6 more…
cell line
HepG2
45
1
GM12878
15
tissue
spleen
6
1
2
islet of Langerhans
6
liver
4
2
body of pancreas
2
2
pancreas
2
1
+ See 3 more…
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