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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
ChIP-seq
5
DNase-seq
3
total RNA-seq
1
ATAC-seq
1
FAIRE-seq
1
Hi-C
Assay category
24
DNA binding
7
DNA accessibility
3
Transcription
1
3D chromatin structure
Target of assay
21
histone
21
histone modification
12
broad histone mark
9
narrow histone mark
3
control
Date released
61
September, 2018
35
October, 2019
33
April, 2018
33
July, 2018
29
August, 2017
26
February, 2021
25
May, 2021
20
June, 2019
19
December, 2017
16
November, 2019
15
February, 2023
13
July, 2019
6
August, 2021
6
December, 2019
6
November, 2017
6
November, 2020
5
May, 2019
5
September, 2017
3
August, 2018
3
March, 2020
2
October, 2018
1
June, 2018
0
April, 2020
Available data
32
bam
25
bigWig
21
bed narrowPeak
14
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
3
tsv
2
bed bed3+
1
hic
1
tar
Organism
35
Homo sapiens
Biosample type
33
primary cell
2
cell line
Organ
86
brain
69
limb
47
blood vessel
47
vasculature
42
nerve
35
epithelium
30
kidney
26
artery
21
eye
21
vein
18
pancreas
8
heart
7
liver
4
connective tissue
4
gonad
4
ovary
2
pituitary gland
1
adipose tissue
1
lymph node
1
skin of body
Project
35
AMP
Genome assembly (visualization)
27
hg19
23
GRCh38
Lab
35
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
BIOSAMPLE
ASSAY
35 results
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Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
FAIRE-seq
Hi-C
primary cell
endothelial cell of umbilical vein
17
2
1
1
epithelial cell of proximal tubule
7
kidney glomerular epithelial cell
1
1
kidney tubule cell
1
1
Liver fetal (hepatocyte)
1
cell line
glomerular visceral epithelial cell
1
1
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